The advantage to having the transducer in the hull is that you don't have to worry about breaking off in shallow water and it will also give you a better reading at higher speeds. Depending on your boat and where you fish, this may or may not be importanat. The down side is they can be a pain to mount, and shooting thru the hull of the boat may weaken your sonar returns (aka not as sensitive). A lot of bass fisherman run both.